Mini Apple Cheesecake Cups 🍎- The Ultimate Fall Dessert You’ll Crave All Year Round!

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Author: Lora
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Mini Apple Cheesecake Cups

A Fall-Inspired Bite of Heaven

Imagine the warmth of cinnamon, the richness of cream cheese, and the sweet burst of tender apples all nestled into one adorable little cup. That’s exactly what these Mini Apple Cheesecake Cups deliver. Whether you’re prepping for a cozy evening, a holiday gathering, or just craving something a little indulgent — this dessert ticks all the boxes. It’s like apple pie and cheesecake had a delicious baby. And let’s be honest — who could resist that combo?

These cuties are super easy to make and even easier to devour. With a golden, buttery graham cracker base, a smooth and creamy cheesecake center, and a glossy, caramelized apple topping that looks just like the one in the image you see above — they’re the definition of irresistible.

Why You’ll Fall in Love with These Mini Apple Cheesecake Cups

First off — they’re mini. Which means you can eat one… or three. No judgment here! But beyond that, these cheesecake cups are everything you want in a dessert:

  • 🍂 Cozy Fall Flavors – Cinnamon, nutmeg, brown sugar, buttery apples… need we say more?
  • 🧁 Perfect Portions – No slicing or serving needed. Just grab, bite, and smile.
  • 🍰 Creamy and Crunchy – That satisfying mix of smooth cheesecake and crunchy crust? Chef’s kiss.
  • ⏱️ Quick and Simple – Less than 30 minutes of active work!

Plus, they look like little works of art — golden crust, creamy filling, and that glossy apple topping with a kiss of cinnamon. Whether you serve them plain or add whipped cream and caramel drizzle, they’re gonna wow everyone.

The Perfect Blend of Flavors

The balance in these cheesecake cups is what makes them a true winner. You get:

  • Crunch from the buttery graham crust.
  • Creaminess from the slightly tangy, lightly sweet cheesecake layer.
  • Warmth and sweetness from the spiced apple topping.

Think of them as bite-sized bundles of joy that bring together your favorite fall desserts — apple pie and cheesecake — into one easy-to-make, easy-to-serve treat.

Ingredients Breakdown

Let’s take a closer look at what you’ll need. Each layer adds something special to the mix:

For the Crust:

  • 1 cup graham cracker crumbs
  • 2 tbsp granulated sugar
  • 4 tbsp melted butter

This base gives you that sweet, nutty, toasty crunch that supports the creamy layers above.

For the Cheesecake Layer:

  • 8 oz cream cheese (softened)
  • 1/4 cup granulated sugar
  • 1 large egg
  • 1 tsp vanilla extract

Simple, but effective. This layer is smooth, light, and the perfect contrast to the apple topping.

For the Apple Topping:

  • 2 medium apples (peeled & diced)
  • 2 tbsp butter
  • 2 tbsp brown sugar
  • 1/2 tsp cinnamon
  • 1/4 tsp nutmeg
  • 1 tsp lemon juice

These ingredients create a caramelized apple topping that smells like a fall candle and tastes even better.

Optional Garnish:

  • Whipped cream
  • Caramel sauce

Optional, yes. But recommended? 100%.

Essential Kitchen Tools You’ll Need

Here’s everything you’ll need to bring these mini delights to life:

  • Muffin tin (12-cup)
  • Cupcake liners
  • Mixing bowls (medium + small)
  • Hand mixer or stand mixer
  • Spatula
  • Small saucepan or skillet
  • Spoon for layering
  • Cooling rack

Once you’ve got these on hand, you’re ready to roll!

Step-by-Step Instructions

Let’s break it down so your mini cheesecakes come out perfect every single time.

Preparing the Graham Cracker Crust

Start by preheating your oven to 325°F (165°C). Line your muffin tin with cupcake liners. Mix your graham cracker crumbs, granulated sugar, and melted butter in a bowl. Stir until all the crumbs are moist and the texture feels like wet sand.

Using a spoon (or your fingers), press about 1 tablespoon of this crust mixture into the bottom of each liner. Pack it down firmly so it holds its shape after baking.

Baking the Crust

Pop your crusts into the preheated oven for 5 minutes. This helps them firm up and creates that toasty base that pairs beautifully with the creamy cheesecake.

Remove them from the oven and let them cool while you prep the cheesecake filling.

Whipping Up the Cheesecake Layer

In a mixing bowl, beat the softened cream cheese and granulated sugar until smooth and lump-free. Add in the egg and vanilla extract, and continue mixing until fully incorporated and silky.

Using a spoon or small scoop, fill each crust with cheesecake batter until about 2/3 full. Smooth out the tops with the back of a spoon.

Baking the Cheesecake Cups

Bake the cheesecakes for 15–18 minutes, or until the centers are just set (they might jiggle slightly, and that’s okay!). Once done, remove them from the oven and let them cool in the pan for about 10 minutes, then transfer to a wire rack to cool completely.

Once cooled, chill them in the fridge for at least an hour to firm up.

Making the Cinnamon Apple Topping

While your cheesecakes are chilling, it’s time to make that dreamy apple topping.

Melt butter in a skillet over medium heat. Add your peeled and diced apples, brown sugar, cinnamon, nutmeg, and lemon juice. Cook until the apples are soft and the mixture is thick and syrupy — about 7 minutes.

Let it cool to room temperature before spooning over your chilled cheesecakes.

Assembling the Final Dessert

Now comes the fun part — layering the apple topping on your mini cheesecakes! Use a spoon to pile on a generous portion of the glossy apple mixture. Don’t worry about perfection — the rustic look adds to the charm.

Chill the assembled cheesecakes again for at least 30 minutes so the layers meld together.

Tips for Making the Best Mini Cheesecakes

Want your cheesecakes to come out bakery-level delicious every time? Here are a few pro tips:

  • Room temperature cream cheese is key – Cold cream cheese can make your batter lumpy. Let it soften first!
  • Don’t overmix the batter – You want to beat it just until smooth. Overmixing can lead to cracks in the cheesecake.
  • Let them cool slowly – Sudden temperature changes can cause your cheesecakes to sink or crack. Cool at room temp before chilling.
  • Use cupcake liners – Not only do they make cleanup easier, but they also help the crust hold its shape.

Variations to Try

Wanna switch things up a little? This base recipe is super flexible. Try these fun spins:

Add a Streusel Topping

Mix together flour, brown sugar, cinnamon, and cold butter. Sprinkle over the apple topping before baking briefly. Adds a sweet, crumbly crunch!

Drizzle with Salted Caramel

After adding the apple topping, warm some store-bought or homemade caramel sauce and drizzle it generously. Sprinkle with sea salt for extra flavor.

Try with Different Fruit Toppings

Not feeling apples? No problem. Try using:

  • Blueberries & lemon zest
  • Peaches & cinnamon
  • Strawberries & balsamic glaze

The cheesecake base goes with almost any fruit combo!

Can You Make These Ahead of Time?

Absolutely! In fact, these taste even better after a night in the fridge. Here’s how:

  • Prepare and bake as usual.
  • Once cooled, store in an airtight container.
  • Add the apple topping just before serving to keep them fresh and glossy.

You can make the components a day in advance and assemble just before your event.

Print
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Mini Apple Cheesecake Cups

Mini Apple Cheesecake Cups

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  • Author: Lora
  • Prep Time: 15 minutes
  • Cook Time: 25 minutes
  • Total Time: 1 hour 40 minutes
  • Category: Fall Desserts | Mini Cheesecakes | Apple Treats

Description

🍏 These Mini Apple Cheesecake Cups are the perfect blend of creamy cheesecake, buttery graham crust, and sweet cinnamon-spiced apples. Each bite tastes like fall in a cup — cozy, rich, and absolutely irresistible! ✨🍂


Ingredients

Scale

For the Crust:

  • 1 cup graham cracker crumbs

  • 2 tbsp granulated sugar

  • 4 tbsp melted butter

For the Cheesecake Layer:

  • 8 oz cream cheese, softened

  • 1/4 cup granulated sugar

  • 1 large egg

  • 1 tsp vanilla extract

For the Apple Topping:

  • 2 medium apples, peeled and diced 🍎

  • 2 tbsp butter

  • 2 tbsp brown sugar

  • 1/2 tsp cinnamon

  • 1/4 tsp nutmeg

  • 1 tsp lemon juice

Optional Garnish:

  • Whipped cream or caramel sauce 🍯


Instructions

  • Prepare the Crust: Preheat oven to 325°F (165°C). Line a muffin tin with cupcake liners. Mix graham cracker crumbs, sugar, and melted butter until combined. Press about 1 tablespoon of mixture into each liner to form a crust. ⏱️ 5 minutes

  • Bake the Crust: Bake for 5 minutes to set, then remove from oven and let cool. ⏱️ 5 minutes

  • Make the Cheesecake Filling: In a medium bowl, beat cream cheese and sugar until smooth. Add egg and vanilla extract; mix until creamy. Spoon the mixture evenly over cooled crusts. ⏱️ 7 minutes

  • Bake Cheesecakes: Bake for 15–18 minutes, until centers are set. Let cool completely. ⏱️ 18 minutes

  • Prepare the Apple Topping: In a skillet, melt butter over medium heat. Add apples, brown sugar, cinnamon, nutmeg, and lemon juice. Cook until apples are tender and caramelized. ⏱️ 7 minutes

  • Assemble & Chill: Spoon the apple topping over each mini cheesecake. Chill for at least 1 hour before serving. ⏱️ 60 minutes

  • Serve & Enjoy: Top with whipped cream or drizzle with caramel for the perfect sweet finish. 😍


Notes

  • Perfect bite-sized dessert for fall gatherings or Thanksgiving.

  • Combines creamy cheesecake with warm cinnamon-spiced apples for a cozy flavor.

  • Easy to prepare and great for make-ahead desserts — chilling improves texture.

  • You can swap apples for pears or add caramel drizzle for extra indulgence.

  • Best served cold, but delicious slightly chilled too.


Nutrition

  • Serving Size: 12 mini cheesecakes
  • Calories: 290 kcal

How to Store and Freeze Them

Leftovers? (If that’s even possible…)

Storing:

  • Refrigerate in an airtight container for up to 5 days.
  • They taste great chilled, straight from the fridge.

Freezing:

  • Freeze without the apple topping.
  • Wrap each cheesecake tightly in plastic wrap and place in a freezer-safe container.
  • Freeze for up to 2 months.
  • Thaw overnight in the fridge, then top with fresh apple mixture.

Serving Suggestions

These beauties are perfect for:

  • 🍁 Thanksgiving dessert tables
  • 🎉 Holiday parties
  • 🥂 Brunch gatherings
  • Afternoon coffee treats

Dress them up with:

  • A swirl of whipped cream
  • A drizzle of warm caramel
  • A sprinkle of cinnamon or nutmeg
  • Crushed pecans or walnuts on top for a crunch

They also pair beautifully with a cup of chai, pumpkin spice latte, or mulled cider!

Similar recipes :

No-Bake Salted Caramel Cheesecake Cups

Coconut Cream Pie Cookie Cups: A Sweet Escape in Every Bite

Common Mistakes to Avoid

Let’s keep you from falling into dessert disaster:

  • Don’t underbake the crust – A soggy base = sad cheesecake.
  • Avoid overfilling the liners – Leave room for the apple topping.
  • Don’t skip the chilling – These need time to set properly. Warm cheesecake? Not the vibe.
  • Too much lemon juice – A little goes a long way. It brightens the apple mix, but too much can overpower the flavor.

Nutritional Information (Per Serving)

Note: This is approximate and based on 12 mini cheesecakes.

NutrientAmount
Calories290 kcal
Carbs26g
Protein3g
Fat20g
Saturated Fat10g
Sugar18g
Fiber1g

These aren’t diet food — and that’s the point. They’re rich, indulgent, and meant to be savored.

Mini Apple Cheesecake Cups

What Makes This Recipe Stand Out?

Besides the fact that they’re completely adorable? It’s the balance.

Most mini cheesecakes are overly sweet or too tangy — but this one? Perfectly balanced. The graham crust isn’t just a base, it adds flavor. The cheesecake isn’t too dense or too soft. The apple topping? Fresh and real — no canned pie filling here.

And perhaps most importantly, they actually look like the photo you saw earlier: golden crust, silky middle, and that irresistible glossy apple finish. The cinnamon sticks in the image aren’t just for show — they reflect the warm spice in every bite.

Conclusion: Cozy Fall Vibes in Every Bite

These Mini Apple Cheesecake Cups are like wrapping yourself in a warm blanket on a crisp autumn day — comforting, nostalgic, and 100% satisfying. From the buttery graham crust to the creamy cheesecake center and the sticky-sweet apple topping, each layer brings its own magic.

They’re easy enough for weeknight baking and impressive enough for any holiday table. Whether you’re enjoying them with friends, family, or hoarding them all for yourself (no judgment), they’re guaranteed to bring smiles.

So, grab your muffin tin and get baking — your taste buds will thank you.

You may like also this recipe : Reese Dessert Cups

FAQs

1. Can I use canned apple pie filling instead of making the topping?
You can, but the flavor and texture of fresh-cooked apples is much better. Homemade lets you control the sweetness and spice.

2. What kind of apples work best?
Granny Smiths add tartness, while Honeycrisp or Fuji bring sweetness. A mix of both works beautifully.

3. Can I double the recipe?
Absolutely! This recipe easily doubles — just use two muffin pans or bake in batches.

4. Do these need to be refrigerated?
Yes. Because of the cream cheese base, they should be stored in the fridge.

5. What if I don’t have cupcake liners?
You can grease each muffin cup well with butter or nonstick spray, but liners make removal and cleanup much easier.

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Hi, I’m Lora!

I'm so glad you've found your way here. My kitchen is my happy place, and if you're just starting your own cooking journey, I want you to know you're in the right place.

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